ZLab研究成果汇总

蛋白质功能预测

PlantPTM: A deep learning framework integrating protein language models with multi-view features for predicting diverse post-translational modification sites in plants

Gensheng Dou^†#, Kaiyuan Wang^†, Zhaohui Qin^†, Min Zhang, Wentian Zhang, Chunbo Miao, Junzhou Li^#, Zhen Chen^#.

Molecular Plant

基因组编辑

Efficient homologous replacement and deletion of large genomic fragments through template-jumping prime editing in rice

Huixia Liu^†, Y. Wang^†, S. Guan^†, Z. Zhang, Zhaohui Qin, D. Zhao, F. Li, Min Zhang, Wentian Zhang, Y. Du, Junzhou Li, Zhen Chen^#, Chunbo Miao^#.

New Phytologist

AI sheds new light on genome editing

Zhaohui Qin (秦兆辉)^†, Zhaolong Deng (邓兆龙)^†, Chengwei Li (李成伟), Daowen Wang (王道文), Xiang Ji (姬祥)^#, Zhen Chen (陈震)^#.

Trends in Biotechnology

SLAM: Structure-aware lysine β-hydroxybutyrylation prediction with protein language model

Zhaohui Qin^†, Huixia Liu^†, Pei Zhao, Kaiyuan Wang, Haoran Ren, Chunbo Miao, Junzhou Li^#, Yong-Zi Chen^#, Zhen Chen^#.

International Journal of Biological Macromolecules

Current computational tools for protein lysine acylation site prediction

Zhaohui Qin^†, Haoran Ren^†, Pei Zhao^†, Kaiyuan Wang, Huixia Liu, Chunbo Miao, Yanxiu Du, Junzhou Li^#, Liuji Wu^#, Zhen Chen^#

Briefings in Bioinformatics

ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning

Xiaoti Jia^†, Pei Zhao^†, Fuyi Li^†, Zhaohui Qin, Haoran Ren, Junzhou Li, Chunbo Miao, Quanzhi Zhao, Tatsuya Akutsu, Gensheng Dou^#, Zhen Chen^#, Jiangning Song^#.

Briefings in Bioinformatics

iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets

Zhen Chen^†, Xuhan Liu^†, Pei Zhao^†, Chen Li^†, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B Gasser, Junzhou Li, Zuoren Yang^*, Xin Gao^*, Lukasz Kurgan^*, Jiangning Song^*.

Nucleic Acids Research

iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization

Zhen Chen^†, Pei Zhao^†, Chen Li^†, Fuyi Li, Dongxu Xiang, Yong-Zi Chen, Tatsuya Akutsu, Roger J Daly, Geoffrey I Webb, Quanzhi Zhao^*, Lukasz Kurgan^*, Jiangning Song^*.

Nucleic Acids Research